miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008453
species: Sorghum bicolor
miRNA family: MIRf1673
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGGGCTGCGGCTGCAGTTGAG

miRNA*
 TCACTGCGCCACGGCCCCCG

mismatches: 2
bulges: 1
View larger
pre-miRNA
 TGGCTACCTTCACTGCGCCACGGCCCCCGAGCCCGGAGCCCCGGATGACCACATCAGCTGCCGACGATGGCAGTTCTTTGGCGCCTACCGTGACGGAGGG
AGAAACCACAGCCGAGGCCGGGGCTGGGGCAGTTGTTGAAGAGTGCGCCGAGGGCAAGGAGACGAAGGTGGGGGCTGCGGCTGCAGTTGAGGAGCCGGAT
GAGGAGGCGC

dot-bracket secondary structure
(((((.((((.((((((((.(((((((((.((((..((((((((.(((.....)))((((((......)))))).(((((((.(((.(((...))).)))
..........))))))))))))))).))))..(((((......(((.......)))....)))))...))))))))).))).))))).)))))))))...
..........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;