ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIRf1396
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGCCTCCTCGTGCTCCTCC miRNA* ACGAGGACGAGGAGGCCGCCT mismatches: 4 bulges: 0 |
pre-miRNA
TCGACGACGAGGACGAGGACGAGGAGGCCGCCTCCATCCACATCCATCCCGCCTCGCCTCAGCTGTCTCCGACCGCCCTCTGCCTACTTTTACTCCTACT
CCTCCCCGTCGGCGTCGTCGTACAACGGCTGGGCCGACCTCGCCGCGGCGCCCGACACCCCTTTCCCCTTCCCCTTCCCCCTCTCCCTCCCGCCGCAGCC
CACCACGCATGGCCTCCTCGTGCTCCTCCCCACCGTCG
dot-bracket secondary structure
....(((((.(((.(((.(((((((((((((...................)).(((.(((((((((...((((((((.......................
..........))))..))))....))))))))).))).......((((((...((................................)).)))))).((.
......))..))))))))))).))).)))....)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGACGACGAGGACGAGGACGAGGAGGCCGCCTCCATCCACATCCATCCCGCCTCGCCTCAGCTGTCTCCGACCGCCCTCTGCCTACTTTTACTCCTACT
CCTCCCCGTCGGCGTCGTCGTACAACGGCTGGGCCGACCTCGCCGCGGCGCCCGACACCCCTTTCCCCTTCCCCTTCCCCCTCTCCCTCCCGCCGCAGCC
CACCACGCATGGCCTCCTCGTGCTCCTCCCCACCGTCG
dot-bracket secondary structure
....(((((.(((.(((.(((((((((((((...................)).(((.(((((((((...((((((((.......................
..........))))..))))....))))))))).))).......((((((...((................................)).)))))).((.
......))..))))))))))).))).)))....)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
