ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: MIRf917
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCTCTCTCTTCTGTCAACG miRNA* TTTACACAGATAGAAAGCGG mismatches: 4 bulges: 1 |
pre-miRNA
AAACACGAAATCTGAAGAAACGTTTACACAGATAGAAAGCGGCTTTACTTTGAGCTTCCAGAGGGGCCATGGCCGCCCTGATGAGCAGGTGGTTGCTGGT
AGCAGCCGCTCTCTCTCTCCGTATCAAACCTCTGGCGGGTTCCAACTTCCCAGCAAAGGTGTAGGAGAATACTCAGGAGGTCTCAATGAATCGCAAGATT
TCTACAGTGCTCTCTCTCTTCTGTCAACGTCTTCGGATTCACGTGGGA
dot-bracket secondary structure
...((((.((((((((((..((((.(((.(((.(((.((((.((.((..((((((((((.(((((((.......)))).((.(((..((((((((((...
)))))))))))))))(((((.......((((((((.((((....)))).))))...))))...)))))...))).))))).))))).(((((....))))
).)).)))))).))).)))..))).))))))))))))))..))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
AAACACGAAATCTGAAGAAACGTTTACACAGATAGAAAGCGGCTTTACTTTGAGCTTCCAGAGGGGCCATGGCCGCCCTGATGAGCAGGTGGTTGCTGGT
AGCAGCCGCTCTCTCTCTCCGTATCAAACCTCTGGCGGGTTCCAACTTCCCAGCAAAGGTGTAGGAGAATACTCAGGAGGTCTCAATGAATCGCAAGATT
TCTACAGTGCTCTCTCTCTTCTGTCAACGTCTTCGGATTCACGTGGGA
dot-bracket secondary structure
...((((.((((((((((..((((.(((.(((.(((.((((.((.((..((((((((((.(((((((.......)))).((.(((..((((((((((...
)))))))))))))))(((((.......((((((((.((((....)))).))))...))))...)))))...))).))))).))))).(((((....))))
).)).)))))).))).)))..))).))))))))))))))..))))...
SIMILARITIES| miRBase far-MIR156b: 0.00005 PMRD ath-miR156s: 0.0000000000009 microPC miR157: 0.0002 | UniProt sp|Q8S9L0|SPL10_ARATH: 0.000000000000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
