miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000868
species: Helianthus paradoxus
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Helianthus paradoxus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGTGCCAATATCACG

miRNA*
 AGATGTTGGTTCGGTTCAATA

mismatches: 2
bulges: 0
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pre-miRNA
 GTTGAACGAGATGTTGGTTCGGTTCAATAAGAACTCAACGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATCACGTGCAT

dot-bracket secondary structure
..((.(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))).))).)).


SIMILARITIES
miRBase rco-MIR171a: 0.0000000000003

PMRD vvi-miR171c: 0.0000000003

microPC miR171: 3e-41		UniProt no hits

RFAM MIR171_1: 0.000000000006		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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