ABOUT THIS RECORDspecies: Helianthus tuberosus
miRNA family: MIRf100
source: miRNEST
Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTAACTGAATCGAACCGATT miRNA* TCGGTTTTGTTTATGGTGT mismatches: 3 bulges: 2 |
pre-miRNA
GAAAATTGTAGTTCGGTTTTGTTTATGGTGTGTGACATAGCAAATTAACTGAATCGAACCGATTATACATATG
dot-bracket secondary structure
......((((..(((((((.(((((((((.(((......))).))))..))))).)))))))...))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAAAATTGTAGTTCGGTTTTGTTTATGGTGTGTGACATAGCAAATTAACTGAATCGAACCGATTATACATATG
dot-bracket secondary structure
......((((..(((((((.(((((((((.(((......))).))))..))))).)))))))...))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
