ABOUT THIS RECORDspecies: Ipomoea nil
miRNA family: MIR394
source: miRNEST
Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTGGGCATACTGCCAACAG miRNA* TTGGCATTCTGTCCACCTCC mismatches: 5 bulges: 0 |
pre-miRNA
CATTTTCATGGAGGTTTGGCAAAGGGTTTCCTACAGAGCTTATTGGCATTCTGTCCACCTCCACTATTTTTTGACCCAAAAAAAAGAAGAAATCTATTAT
GGTAGAGGTGGGCATACTGCCAACAGAGATCTGTGGGTTTCTCTTTGTAAAACTCCCGTGATACT
dot-bracket secondary structure
.....((((((.(((((.((((((((...((((((((.(((.((((((...((((((((((.(((((((((((...))))))..(((.....)))...))
))).))))))))))...))))))..))).))))))))...)))))))).))))).))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATTTTCATGGAGGTTTGGCAAAGGGTTTCCTACAGAGCTTATTGGCATTCTGTCCACCTCCACTATTTTTTGACCCAAAAAAAAGAAGAAATCTATTAT
GGTAGAGGTGGGCATACTGCCAACAGAGATCTGTGGGTTTCTCTTTGTAAAACTCCCGTGATACT
dot-bracket secondary structure
.....((((((.(((((.((((((((...((((((((.(((.((((((...((((((((((.(((((((((((...))))))..(((.....)))...))
))).))))))))))...))))))..))).))))))))...)))))))).))))).))))))....
SIMILARITIES| miRBase ghr-MIR394a: 0.000000000000002 PMRD ptc-miRf10096-akr: 0.0000000000001 microPC miR394: 4e-26 | UniProt no hits RFAM MIR394: 0.000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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