miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000898
species: Helianthus tuberosus
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGGATTGAAGGGAGCTCTA

miRNA*
 GAGCTCCTTAAAGTCCAATAG

mismatches: 3
bulges: 0
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pre-miRNA
 GTGGGATGAAGTAGAGCTCCTTAAAGTCCAATAGAAGATCTGAGTGAGAACATAGAGCTGCTAGTTTATGGATCCCTCAAGTCCTATCTTTGTTGATGTA
TAGGCTTTGTGGCTTGCATACACTTGGAGCTTTATTACCCTCCTTATGATCCTTTTTTGGATTGAAGGGAGCTCTACACCATCATA

dot-bracket secondary structure
....((((..((((((((((((..(((((((.(((.((((((((.(((...((((((((...(((.((((((.((..((((.(((((............)
)))).)))).)).)).)))).)))...))))))))....))))))).)))).))).)))))))..))))))))))))..))))...


SIMILARITIES
miRBase vvi-MIR159c: 0.000000002

PMRD vvi-miR159c: 0.000000002

microPC miR159: 2e-90		UniProt no hits

RFAM MIR159: 0.00000005		most similar mature miRNAs

Identical with: miR159 from microPC (MNEST045888)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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