miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST009612
species: Cavia porcellus
miRNA family: miR-3195
source: miRNEST

Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGCGCCGGGTCCGGGTCTTCC

miRNA*
 AAGACCCACTCCCCGGCGCCGCT

mismatches: 3
bulges: 2
View larger
pre-miRNA
 GGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAACAGGACC
CCGGCGCGCCGGGTCCGGGTCTTCCCGGAGT

dot-bracket secondary structure
.......(((((((((....((((((((.(((...(((((((((...(((.....)))...)))))..((.((...((((.....))))...)).)).))
)))))))))))))...)))))))))......


SIMILARITIES
miRBase mmu-mir-5105: 1e-19

PMRD no hits

microPC no hits		UniProt no hits

RFAM SSU_rRNA_eukarya: 3e-39		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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