ABOUT THIS RECORDspecies: Cavia porcellus
miRNA family: miR-3195
source: miRNEST
Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCGCCGGGTCCGGGTCTTCC miRNA* AAGACCCACTCCCCGGCGCCGCT mismatches: 3 bulges: 2 |
pre-miRNA
GGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAACAGGACC
CCGGCGCGCCGGGTCCGGGTCTTCCCGGAGT
dot-bracket secondary structure
.......(((((((((....((((((((.(((...(((((((((...(((.....)))...)))))..((.((...((((.....))))...)).)).))
)))))))))))))...)))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAACAGGACC
CCGGCGCGCCGGGTCCGGGTCTTCCCGGAGT
dot-bracket secondary structure
.......(((((((((....((((((((.(((...(((((((((...(((.....)))...)))))..((.((...((((.....))))...)).)).))
)))))))))))))...)))))))))......
SIMILARITIES| miRBase mmu-mir-5105: 1e-19 PMRD no hits microPC no hits | UniProt no hits RFAM SSU_rRNA_eukarya: 3e-39 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
