miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Oryctolagus cuniculus, Cavia porcellus, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST009613
species: Cavia porcellus
miRNA family: miR-3195
source: miRNEST

Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGCGCCGGGTCCGGGTCTTCC

miRNA*
 AAGACCCACTCCCCGGCGCCGCT

mismatches: 3
bulges: 2
View larger
pre-miRNA
 GGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGAGTGAGGCCGGTAGCGGCCCCA
CGGCGCGCCGGGTCCGGGTCTTCCCGGAGT

dot-bracket secondary structure
.......(((((((((....((((((((.((.(((((((((((((..(((.(((...((.(((...))))).))).))).)).))))........)))))
))))))))))))...)))))))))......


SIMILARITIES
miRBase mmu-mir-5105: 9e-33

PMRD no hits

microPC no hits		UniProt no hits

RFAM SSU_rRNA_eukarya: 1e-56		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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