miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Macaca fascicularis, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Peromyscus polionotus subgriseus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST009615
species: Cavia porcellus
miRNA family: miR-1186b
source: miRNEST

Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGGATTACAGGCATGCACCA

miRNA*
 GTACACACCTATAATCCCAGC

mismatches: 4
bulges: 0
View larger
pre-miRNA
 CTGTCTCAGCCTGGGATTACAGGCATGCACCACCACACCCCACTTAGTAGCAAACATTTTAATTAATTGAATTTTTAAAAACAACTAACATTAAGAAGAC
TCAAATGGAACAACTGAAAAGGGTAAGAGTAATGATTATATTCAATTTGTGAGCTAGATACAGACAAGGTGGTACACACCTATAATCCCAGCACTCTGAG


dot-bracket secondary structure
....(((((.(((((((((.(((..((.((((((..((((...(((((......((((.........(((.(((((((............)))))))...
))))))).....)))))...))))..(((((.......)))))..((((((.......))))))...)))))).))..))).)))))))))....)))))



SIMILARITIES
miRBase no hits

PMRD ptc-miRf10804-akr: 0.000003

microPC no hits		UniProt no hits

RFAM Metazoa_SRP: 0.00000001		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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