miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Oryctolagus cuniculus, Cavia porcellus, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST009615
species: Cavia porcellus
miRNA family: miR-1186b
source: miRNEST

Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGGATTACAGGCATGCACCA

miRNA*
 GTACACACCTATAATCCCAGC

mismatches: 4
bulges: 0
View larger
pre-miRNA
 CTGTCTCAGCCTGGGATTACAGGCATGCACCACCACACCCCACTTAGTAGCAAACATTTTAATTAATTGAATTTTTAAAAACAACTAACATTAAGAAGAC
TCAAATGGAACAACTGAAAAGGGTAAGAGTAATGATTATATTCAATTTGTGAGCTAGATACAGACAAGGTGGTACACACCTATAATCCCAGCACTCTGAG


dot-bracket secondary structure
....(((((.(((((((((.(((..((.((((((..((((...(((((......((((.........(((.(((((((............)))))))...
))))))).....)))))...))))..(((((.......)))))..((((((.......))))))...)))))).))..))).)))))))))....)))))



SIMILARITIES
miRBase no hits

PMRD ptc-miRf10804-akr: 0.000003

microPC no hits		UniProt no hits

RFAM Metazoa_SRP: 0.00000001		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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