ABOUT THIS RECORDspecies: Cavia porcellus
miRNA family: miR-1186b
source: miRNEST
Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGATTACAGGCATGCACCA miRNA* GTACACACCTATAATCCCAGC mismatches: 4 bulges: 0 |
pre-miRNA
CTGTCTCAGCCTGGGATTACAGGCATGCACCACCACACCCCACTTAGTAGCAAACATTTTAATTAATTGAATTTTTAAAAACAACTAACATTAAGAAGAC
TCAAATGGAACAACTGAAAAGGGTAAGAGTAATGATTATATTCAATTTGTGAGCTAGATACAGACAAGGTGGTACACACCTATAATCCCAGCACTCTGAG
dot-bracket secondary structure
....(((((.(((((((((.(((..((.((((((..((((...(((((......((((.........(((.(((((((............)))))))...
))))))).....)))))...))))..(((((.......)))))..((((((.......))))))...)))))).))..))).)))))))))....)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTGTCTCAGCCTGGGATTACAGGCATGCACCACCACACCCCACTTAGTAGCAAACATTTTAATTAATTGAATTTTTAAAAACAACTAACATTAAGAAGAC
TCAAATGGAACAACTGAAAAGGGTAAGAGTAATGATTATATTCAATTTGTGAGCTAGATACAGACAAGGTGGTACACACCTATAATCCCAGCACTCTGAG
dot-bracket secondary structure
....(((((.(((((((((.(((..((.((((((..((((...(((((......((((.........(((.(((((((............)))))))...
))))))).....)))))...))))..(((((.......)))))..((((((.......))))))...)))))).))..))).)))))))))....)))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10804-akr: 0.000003 microPC no hits | UniProt no hits RFAM Metazoa_SRP: 0.00000001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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