ABOUT THIS RECORDspecies: Cavia porcellus
miRNA family: mir-1195
source: miRNEST
Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGTTCAAGGCCAGCCTGAA miRNA* CGAGGCCAGTCTGGACTCCAC mismatches: 3 bulges: 2 |
pre-miRNA
GGCAAGAGGATCACTACGAGTTCGAGGCCAGTCTGGACTCCACAATTGAGTTCAAGGCCAGCCTGAACAATACAGTGAGACCGTTT
dot-bracket secondary structure
.......((.(((((....((((.((((..((((((((((.......)))))).))))..)))))))).....)))))..))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGCAAGAGGATCACTACGAGTTCGAGGCCAGTCTGGACTCCACAATTGAGTTCAAGGCCAGCCTGAACAATACAGTGAGACCGTTT
dot-bracket secondary structure
.......((.(((((....((((.((((..((((((((((.......)))))).))))..)))))))).....)))))..))....
SIMILARITIES| miRBase mmu-mir-3470b: 0.0002 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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