miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum

ABOUT THIS RECORD

ID: MNEST009668
species: Trichinella pseudospiralis
miRNA family: mir-467
source: miRNEST

Taxonomy by NCBI:
Trichinella pseudospiralis Trichinella Trichinellidae Trichocephalida Enoplia Enoplea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
ATATGTGTGTGCATGTATTTA

miRNA*
AAAATTCATATATATATAT

mismatches: 2
bulges: 2

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pre-miRNA
GCTGAAAATTTTGAAAATTCATATATATATATATATATATATATATATGTGTGTGCATGTATTTAATAATTTGTA

dot-bracket secondary structure
.....((((((((((.((.((((((((((((((((....))))))))))))))))...)).))))).)))))...

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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