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Species belonging to selected taxon:

Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST009958
species: Populus trichocarpa x Populus deltoides
miRNA family: MIRf755
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGTCGAGCAGGAGCTCGAGCT

miRNA*
 CTTGGGTCTCTTGTGAAGACCGC

mismatches: 2
bulges: 2
View larger
pre-miRNA
 TAGACACCTTTGGTCACCTTAGCTTGGGTCTCTTGTGAAGACCGCTGCTCACATTTCTTCTATCAGGTTGTCGGGTTACTGGCCGAGCTGGCGGCCTAGC
TGATGGTCGAGCAGGAGCTCGAGCTGGTGGCCGAGCTGATGGTC

dot-bracket secondary structure
..(((...((((((((((..((((((((.(((((((...(((((..(((.(((..(((......))).))).(((((.(((((...))))).))))))))
...)))))..)))))))))))))))))))))))))......)))


SIMILARITIES
miRBase no hits

PMRD ptc-miRf10177-akr: 1e-66

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: ptc-miRf10177-akr from PMRD (MNEST051999)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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