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ABOUT THIS RECORD

ID: MNEST000032
species: Allium cepa
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCTTCA

miRNA*
AATTTGATGATGATGATATCC

mismatches: 5
bulges: 0

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pre-miRNA
GTCCGAGGTTAGAATTTGATGATGATGATATCCTGCTGGTTGCCCCTTCAGTATCATTTGTGCTTGCTGAAACAGACAAGGAAGGAGCAGAAATGATCAT
GCAGAAGATGGGTTTGAGTGGGAAGAATATTATAATCTTCCCTATGAATGGGGACGGTGGAAGCCACTGGAGCACATTAGTCTATTTTCGGAGCATGAGT
ACGTTTGTACATCACGACAGCATGCGCGGGCAGAACAATGATTGCGCCACTAGATTGTATGAGGTCGCCAGTGCGTTTCTCTCATCCCATCTTTCTTCAA
CCAAGCCATCATCATCATCATCATCTTCAAACAAGAGT


dot-bracket secondary structure
.......(((.(((..(((((((((((((.....((((((.((((((((.(((((((((.(((((.((...........))...))))).)))))))...
)).))))..)))).(((..(((((((.((...)).)))))))...(((..((((.((.((((((((((((.((.......(((......))))).(((((
((....)))).)))((((..((((((..(((..............))).......))))))..)))))))))).)))))).)).))))....))).))))
)).)))....)))))))))))))..))).)))......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q9LSS7|RUBP1_ARATH: 0.00000000008

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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