ABOUT THIS RECORDspecies: Amborella trichopoda
miRNA family: MIRf145
source: miRNEST
Taxonomy by NCBI:
Amborella trichopoda Amborella Amborellaceae Amborellales basal Magnoliophyta Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAGGAGGCATTCAAAGGGCT miRNA* CCCCTTCTTATTCCTCCTCTGAA mismatches: 4 bulges: 2 |
pre-miRNA
TCGGCCCCTTCTTATTCCTCCTCTGAAAAACCCCAGTTCCGTTCTCTGTCCTCTCCTAAACCCTTGAACAAGAGTTTCGAAGCTTCTTGTTCGCTAAACG
GTGATTCATCTGCCAAAAGACATGGCTTTAAGGGTCTAATTCCTTGTGCTATTGCTACTCCAAATTCGGTTTTGAGCGAGGAGGCATTCAAAGGGCTC
dot-bracket secondary structure
..(((((.((...((.(((((((.(.((((((...((((.(((...............)))....))))..((((((.(((((....((.(((((....)
))))..))(((......))).(((((..((((((......)))))).))))).)))..)).))))))))))))...)))))))).))..)).))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCGGCCCCTTCTTATTCCTCCTCTGAAAAACCCCAGTTCCGTTCTCTGTCCTCTCCTAAACCCTTGAACAAGAGTTTCGAAGCTTCTTGTTCGCTAAACG
GTGATTCATCTGCCAAAAGACATGGCTTTAAGGGTCTAATTCCTTGTGCTATTGCTACTCCAAATTCGGTTTTGAGCGAGGAGGCATTCAAAGGGCTC
dot-bracket secondary structure
..(((((.((...((.(((((((.(.((((((...((((.(((...............)))....))))..((((((.(((((....((.(((((....)
))))..))(((......))).(((((..((((((......)))))).))))).)))..)).))))))))))))...)))))))).))..)).))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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