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ABOUT THIS RECORD

ID: MNEST000036
species: Amborella trichopoda
miRNA family: MIRf240
source: miRNEST

Taxonomy by NCBI:
Amborella trichopoda Amborella Amborellaceae Amborellales basal Magnoliophyta Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGTTCAAGAAATCTGTGGAGA

miRNA*
TCCACAGGCTTTCTTGAACATG

mismatches: 1
bulges: 1

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pre-miRNA
GCCAGCTGAAGATTTGATGTTTTCATGCTTTCCACAGGCTTTCTTGAACATGGTATTCCGACGGGCCCTCTTCGAGTTAGCTATCAGAGATGCAATGTTG
AGTAACAGGTTCAAGAAATCTGTGGAGAAACATGGAAACAATCATGACTCTGCGT


dot-bracket secondary structure
....((.((.....(((((((((((((.((((((((((.((((((((((.((.(((((.((((.((..((((.((........)).)))).))..)))))
)))).)).))))))))))))))))))))..))))))))).))))....)).))..



SIMILARITIES
miRBase zma-MIR396d: 0.0000001

PMRD osa-miR396e: 0.0000001

microPC miR396: 2e-49
UniProt no hits

RFAM MIR396: 0.000002
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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