ABOUT THIS RECORDspecies: Amborella trichopoda
miRNA family: miR396f
source: miRNEST
Taxonomy by NCBI:
Amborella trichopoda Amborella Amborellaceae Amborellales basal Magnoliophyta Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCCACAGGCTTTCTTGAAC miRNA* TCAAGAAATCTGTGGAGAAA mismatches: 0 bulges: 1 |
pre-miRNA
AGCCAGCTGAAGATTTGATGTTTTCATGCTTTCCACAGGCTTTCTTGAACATGGTATTCCGACGGGCCCTCTTCGAGTTAGCTATCAGAGATGCAATGTT
GAGTAACAGGTTCAAGAAATCTGTGGAGAAACATGGAAACAATCATGACTCTGCGTT
dot-bracket secondary structure
.....((.((.....(((((((((((((.((((((((((.((((((((((.((.(((((.((((.((..((((.((........)).)))).))..))))
))))).)).))))))))))))))))))))..))))))))).))))....)).))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCCAGCTGAAGATTTGATGTTTTCATGCTTTCCACAGGCTTTCTTGAACATGGTATTCCGACGGGCCCTCTTCGAGTTAGCTATCAGAGATGCAATGTT
GAGTAACAGGTTCAAGAAATCTGTGGAGAAACATGGAAACAATCATGACTCTGCGTT
dot-bracket secondary structure
.....((.((.....(((((((((((((.((((((((((.((((((((((.((.(((((.((((.((..((((.((........)).)))).))..))))
))))).)).))))))))))))))))))))..))))))))).))))....)).))...
SIMILARITIES| miRBase zma-MIR396d: 0.0000001 PMRD osa-miR396e: 0.0000001 microPC miR396: 2e-49 | UniProt no hits RFAM MIR396: 0.000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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