ABOUT THIS RECORDspecies: Aquilegia formosa x Aquilegia pubescens
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Aquilegia formosa x Aquilegia pubescens Aquilegia Ranunculaceae Ranunculales stem eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCATGCATA mismatches: 2 bulges: 0 |
pre-miRNA
TCTATCATGTATGCCTGGCTCCCTGTATGCCATTTGCTTAGTCCATTTAGTATTAGATGGCCTTTGTGGATGGCGTGCGAGGAGCCATGCATATTGTTGT
G
dot-bracket secondary structure
.....((.((((((.(((((((.((((((((((((((..((.(((((((....))))))).))..)))))))))))))).))))))).))))))...)).
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTATCATGTATGCCTGGCTCCCTGTATGCCATTTGCTTAGTCCATTTAGTATTAGATGGCCTTTGTGGATGGCGTGCGAGGAGCCATGCATATTGTTGT
G
dot-bracket secondary structure
.....((.((((((.(((((((.((((((((((((((..((.(((((((....))))))).))..)))))))))))))).))))))).))))))...)).
.
SIMILARITIES| miRBase aqc-MIR160b: 3e-41 PMRD aqc-miR160b: 3e-41 microPC miR160: 5e-40 | UniProt no hits RFAM mir-160: 0.00000000002 | most similar mature miRNAs |
Identical with: aqc-miR160b from PMRD (MNEST046865) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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