ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTGGAGGGATTCCTTCCTTG miRNA* AGGTGATGGTCTTTCCTGTT mismatches: 5 bulges: 1 |
pre-miRNA
GCAAAAATGAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGAATCTTCTGTTTGACGTTATCGATACTATCAGAGGGCTCGACTTCGAGGTGAT
GGTCTTTCCTGTTAAAGTCTTCACGAAAATC
dot-bracket secondary structure
........(((((....(((((..(((((((((....(((((...(((.(((((((.((((.....))))......))))))).)))....)))))....
))))))))).))))).)))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCAAAAATGAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGAATCTTCTGTTTGACGTTATCGATACTATCAGAGGGCTCGACTTCGAGGTGAT
GGTCTTTCCTGTTAAAGTCTTCACGAAAATC
dot-bracket secondary structure
........(((((....(((((..(((((((((....(((((...(((.(((((((.((((.....))))......))))))).)))....)))))....
))))))))).))))).)))))..........
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 0.0001 microPC no hits | UniProt sp|P22589|UBIQP_PHYIN: 0.000000000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
