ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCCCTCTGTCCCAAATA miRNA* TTTTTGGAACGAAGGGAGTAGAA mismatches: 3 bulges: 2 |
pre-miRNA
TCGAAAGAATCATACTCCCTCTGTCCCAAATAAGTGACTTTGATTTGTCTAGATTCACAGACACATTTTAGTGTGTAGATACATGTGAATCTACACAAAT
CCAAGTCACTTATTTTTGGAACGAAGGGAGTAGAAGTGTGACA
dot-bracket secondary structure
((....))....((((((((.(((.(((((((((((((((.(((((((.((((((((((.((((((....)))))).......)))))))))).))))))
).))))))))))..))))).))).))))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TCGAAAGAATCATACTCCCTCTGTCCCAAATAAGTGACTTTGATTTGTCTAGATTCACAGACACATTTTAGTGTGTAGATACATGTGAATCTACACAAAT
CCAAGTCACTTATTTTTGGAACGAAGGGAGTAGAAGTGTGACA
dot-bracket secondary structure
((....))....((((((((.(((.(((((((((((((((.(((((((.((((((((((.((((((....)))))).......)))))))))).))))))
).))))))))))..))))).))).))))))))...........
SIMILARITIES| miRBase far-MIR1122: 0.00003 PMRD bdi-miR2503: 0.0001 microPC no hits | UniProt no hits RFAM MIR1122: 0.00000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
