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ABOUT THIS RECORD

ID: MNEST000171
species: Avena barbata
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCACTCCTCTTTCTGTCAGC

mismatches: 2
bulges: 2
View larger
pre-miRNA
 TGCAATCTGCAAAGTAAGGTCAGCTCCTCCGCGGAGAATCCCTCAAGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGTCCGGCATAACATGTATG
CCGTCTTCGCCGCGTGCTCACTCCTCTTTCTGTCAGCCTCTTTCTCTTGGGAGTTCACCTTACATTCAGATCCACAAGTGGGTTT

dot-bracket secondary structure
((((...))))..(((((((.(((((((....((((((.......((((.((((((((((.((((((((((.(((((.((....(((((((.....))))
)))))..))))).))))))))))...)))))))))).)))))))))).))))))).))))))).....((((((....)))))).


SIMILARITIES
miRBase bdi-MIR156c: 9e-43

PMRD osa-miR156d: 4e-39

microPC miR156: 5e-23		UniProt no hits

RFAM mir-156: 1e-29		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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