ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACATTGTGAAACGGAGGTA miRNA* GCTCCGTTCTACAATATAAGC mismatches: 4 bulges: 0 |
pre-miRNA
TTAAATGCTCGCTCCGTTCTACAATATAAGCCTTTGTAGTAAGCTATTTTAGTTTGCTAAAAAGCTTACATTGTGAAACGGAGGTAGTAGGAA
dot-bracket secondary structure
.....((((..(((((((.((((((.(((((.(((.((((((((((...)))))))))).)))))))).)))))).)))))))..))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTAAATGCTCGCTCCGTTCTACAATATAAGCCTTTGTAGTAAGCTATTTTAGTTTGCTAAAAAGCTTACATTGTGAAACGGAGGTAGTAGGAA
dot-bracket secondary structure
.....((((..(((((((.((((((.(((((.(((.((((((((((...)))))))))).)))))))).)))))).)))))))..))))....
SIMILARITIES| miRBase osa-MIR809d: 0.00002 PMRD osa-miRf10173-akr: 0.00002 microPC no hits | UniProt no hits RFAM MIR1122: 0.0000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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