ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTACTCCCTCCGTCTCAAAA miRNA* TTGAGCCAGAGGGAGTAGTT mismatches: 4 bulges: 1 |
pre-miRNA
ATAGGGTAGAAATAGAATGAGTTCAAACAACGTACTCCCTCCGTCTCAAAATTGATGTCGCAGATTTGTCAAAATTTGGATGAATCTATATACTATTTGA
GCCAGAGGGAGTAGTTGTGGATACTGTTGTTCTTGGTTGACTT
dot-bracket secondary structure
....(((.((...(((((((((((..(((((.(((((((((...((((((....((((...(((((((((........)))))))))))))....)))))
)...)))))))))))))).)).)))..))))))...)).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATAGGGTAGAAATAGAATGAGTTCAAACAACGTACTCCCTCCGTCTCAAAATTGATGTCGCAGATTTGTCAAAATTTGGATGAATCTATATACTATTTGA
GCCAGAGGGAGTAGTTGTGGATACTGTTGTTCTTGGTTGACTT
dot-bracket secondary structure
....(((.((...(((((((((((..(((((.(((((((((...((((((....((((...(((((((((........)))))))))))))....)))))
)...)))))))))))))).)).)))..))))))...)).))).
SIMILARITIES| miRBase no hits PMRD tmo-miR1122: 0.000007 microPC miR1439: 0.0004 | UniProt no hits RFAM MIR1122: 0.00003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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