ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf1372
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGAGCTTCTCGAAAATGTCG miRNA* GCGTGCTTGGGGAGCTCCCCT mismatches: 4 bulges: 0 |
pre-miRNA
CCTCGGAAACAGCGTGCTTGGGGAGCTCCCCTGGGAGGACAAGGCGTACGGAGGTCTGGATCTCCCGGGAGGGGATGGGGGGCTTCTTGTTGTAGCGGGC
CAGCTTGGCGGACTCCCCGGCGAGCTTCTCGAAAATGTCGTTGATGAA
dot-bracket secondary structure
..(((..(((.((((..(((((((((((.((.(((((......((..((((((((((...((((((.....)))).)).))))))).)))....))..((
((...))))...))))).)).)))))))))))..)))).)))..))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCTCGGAAACAGCGTGCTTGGGGAGCTCCCCTGGGAGGACAAGGCGTACGGAGGTCTGGATCTCCCGGGAGGGGATGGGGGGCTTCTTGTTGTAGCGGGC
CAGCTTGGCGGACTCCCCGGCGAGCTTCTCGAAAATGTCGTTGATGAA
dot-bracket secondary structure
..(((..(((.((((..(((((((((((.((.(((((......((..((((((((((...((((((.....)))).)).))))))).)))....))..((
((...))))...))))).)).)))))))))))..)))).)))..))).
SIMILARITIES| miRBase no hits PMRD osa-miRf10132-akr: 5e-50 microPC no hits | UniProt sp|Q7GBK0|H2B7_ORYSJ: 3e-18 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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