ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCCCTCCGACCCATATT miRNA* TATGGGTTGAGGGAGTATCA mismatches: 0 bulges: 1 |
pre-miRNA
AACAATGTTATATACTCCCTCCGACCCATATTAGTTGACTTAGATTCATCTAGATATGAATGTATCTAGTCAAGTTTTAGTGCTAGATACATCTGAATCT
AGACAAATTTGAGTCAACTAATATGGGTTGAGGGAGTATCATTTTGCAG
dot-bracket secondary structure
.....(((.((((((((((((.((((((((((((((((((((((((..(((((((.((.((((((((((.((........)))))))))))).)).))))
)))..)))))))))))))))))))))))))))))))))).))...))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACAATGTTATATACTCCCTCCGACCCATATTAGTTGACTTAGATTCATCTAGATATGAATGTATCTAGTCAAGTTTTAGTGCTAGATACATCTGAATCT
AGACAAATTTGAGTCAACTAATATGGGTTGAGGGAGTATCATTTTGCAG
dot-bracket secondary structure
.....(((.((((((((((((.((((((((((((((((((((((((..(((((((.((.((((((((((.((........)))))))))))).)).))))
)))..)))))))))))))))))))))))))))))))))).))...))).
SIMILARITIES| miRBase far-MIR1122: 0.000002 PMRD tmo-miR1122: 0.000002 microPC miR1122: 0.00003 | UniProt no hits RFAM MIR1122: 0.0000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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