ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCTCAAAATA miRNA* TCTTGAGACTGAGGGAGTAGT mismatches: 2 bulges: 0 |
pre-miRNA
TTTATCGTTTATAAGATATCTACTCCCTCCGTCTCAAAATAGATGTCTCAGATTTGTCAAAATTTGAATGAAACTAGACACAATTTAGTATATAGATTCA
TCGAAGTTTTCACAAATCTGAGACATCTATCTTGAGACTGAGGGAGTAGTTTTAATGTTCGT
dot-bracket secondary structure
.....((..(((.(((...((((((((((.(((((((.(((((((((((((((((((.(((((((..(((((.(((.((........))...))).))))
)..))))))).))))))))))))))))))).))))))).)))))))))).))).)))..)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTATCGTTTATAAGATATCTACTCCCTCCGTCTCAAAATAGATGTCTCAGATTTGTCAAAATTTGAATGAAACTAGACACAATTTAGTATATAGATTCA
TCGAAGTTTTCACAAATCTGAGACATCTATCTTGAGACTGAGGGAGTAGTTTTAATGTTCGT
dot-bracket secondary structure
.....((..(((.(((...((((((((((.(((((((.(((((((((((((((((((.(((((((..(((((.(((.((........))...))).))))
)..))))))).))))))))))))))))))).))))))).)))))))))).))).)))..)).
SIMILARITIES| miRBase no hits PMRD asa-miR1122: 0.00000003 microPC miR1439: 0.00003 | UniProt no hits RFAM MIR1122: 0.00000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
