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ABOUT THIS RECORD

ID: MNEST000193
species: Avena barbata
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACTCCCTCCGTTACAAAATA

miRNA*
 ATTTGGAACGGATGGAGCATG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 ACACATATATATACTCCCTCCGTTACAAAATATAAGATGTTTTAGCTTTTTTTCTTAAAAACATGTATCTAGATACCTTTTAGGGTGTAGGTTCACTCAT
TTTACTCCGAACCTATAAACTAAATGGCGTCTAGATACATGTGTTTCAAACAAAAAGCTACTAAAACATCTTATAATTTGGAACGGATGGAGCATGTAAC
AACA

dot-bracket secondary structure
.......(((((.((((.((((((.((((.(((((((((((((((((((((.....(((.((((((((((((((.((.(((((..(((((((((......
........)))))))))..))))).)).)))))))))))))).))).....)))))))))...)))))))))))).)))).)))))).)))).)))))..
....


SIMILARITIES
miRBase tae-MIR1122: 0.0002

PMRD tae-miR1122: 0.0002

microPC miR1439: 0.00001		UniProt no hits

RFAM MIR1122: 0.0000008		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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