ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR860
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAATAGATTGGACTACATAC miRNA* ATGTAGTCCAATGGATTGAAC mismatches: 3 bulges: 0 |
pre-miRNA
ACATCTTGATCAAAAGTAATATATGTAGTCCAATGGATTGAACTACTCAACCACATCATCGCACTAAAGATGGTGTGCTAGTACTTCAATAGATTGGACT
ACATACATTACACTTGACCAAGACA
dot-bracket secondary structure
...(((((.((((..(((((.(((((((((((((..((((((.((((....(((((((((........)))))))))..)))).))))))..))))))))
))))).)))))..)))).)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACATCTTGATCAAAAGTAATATATGTAGTCCAATGGATTGAACTACTCAACCACATCATCGCACTAAAGATGGTGTGCTAGTACTTCAATAGATTGGACT
ACATACATTACACTTGACCAAGACA
dot-bracket secondary structure
...(((((.((((..(((((.(((((((((((((..((((((.((((....(((((((((........)))))))))..)))).))))))..))))))))
))))).)))))..)))).)))))..
SIMILARITIES| miRBase aly-MIR860: 0.00000000000003 PMRD ath-miR860: 0.000000000007 microPC miR860: 0.00000000003 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
