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ABOUT THIS RECORD
ID:
MNEST000231
species:
Brassica napus
miRNA family:
MIRf129
source:
miRNEST
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCGGAGGGATTCCTTCTTTG
miRNA*
CAGAGTCGATTCTTTCTGGATG
mismatches:
3
bulges:
1
View larger
pre-miRNA
CCCTTAGCCTCAGAACAAGATG
CAGAGTCGATTCTTTCTGGATG
TTGTAGTCAGCCAAGGTACGACCATCTTCAAGCTGTTTTCCGGCGAATATCAACCT
CTGCTGA
TCCGGAGGGATTCCTTCTTTG
TCCTGGATCTTGGCCTTGA
dot-bracket secondary structure
......(((..(((.((.((((
.((((..((.((((((((((..
......(((((..((((..((...(.(((..((((.....))))))).))).))))
..)))))
)))))))))).)).)))).))
)).))..))).))).....
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10060-akr
:
5e-16
microPC
no hits
UniProt
sp|P0CH32|UBQ4_ARATH: 2e-20
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record