ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR413
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTAGTTTCTCTTGTTCTGTCG miRNA* GAGAACGAGGGAGTGAAGTA mismatches: 4 bulges: 1 |
pre-miRNA
AGGGAGAGCAAGGAGAACGAGGGAGTGAAGTATGTGAGGATGGAGAGGAGGATGGGGAAGTTCATGAGGAAGTTTCAGTTGCCTGAGAATGCGGATTTGG
AGAAGATATCTGCTTCTTGTAATGACGGTGTGTTGAAAGTGACTGTTGGGAAGCTTCCTCCTCCTGAGCCTAAGAAACCGAAGACTATTCAGGTCCAAGT
CGCTTGAGCTGCTAGTTTCTCTTGTTCTGTCGTGTGTTTGT
dot-bracket secondary structure
.....(((((.((((((((((((((...((((..(((((((((((((.((..(((....(((((.(((((((((((.(((((..(((((.((((((((..
....)).))))))))))))))))((((((............))))))..)))))))))))....)))))........)))....)).)))...))))..)
).))))...))))...)))))))))))).))...)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
AGGGAGAGCAAGGAGAACGAGGGAGTGAAGTATGTGAGGATGGAGAGGAGGATGGGGAAGTTCATGAGGAAGTTTCAGTTGCCTGAGAATGCGGATTTGG
AGAAGATATCTGCTTCTTGTAATGACGGTGTGTTGAAAGTGACTGTTGGGAAGCTTCCTCCTCCTGAGCCTAAGAAACCGAAGACTATTCAGGTCCAAGT
CGCTTGAGCTGCTAGTTTCTCTTGTTCTGTCGTGTGTTTGT
dot-bracket secondary structure
.....(((((.((((((((((((((...((((..(((((((((((((.((..(((....(((((.(((((((((((.(((((..(((((.((((((((..
....)).))))))))))))))))((((((............))))))..)))))))))))....)))))........)))....)).)))...))))..)
).))))...))))...)))))))))))).))...)))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|O81822|HS177_ARATH: 2e-20 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
