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ABOUT THIS RECORD

ID: MNEST000330
species: Brassica rapa
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGATATTAGTGCGGTTCAATC

miRNA*
TTGAGCCGTGCCAATATCACG

mismatches: 2
bulges: 0

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pre-miRNA
GTCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATAT

dot-bracket secondary structure
.....(((.((((((.(((((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))))).)))))).)))....


SIMILARITIES
miRBase bra-MIR171b: 3e-50

PMRD bra-miR171b: 3e-50

microPC miR171: 0.0000003
UniProt no hits

RFAM MIR171_1: 0.000000000000006
most similar mature miRNAs

Identical with: bna-miR171a from PMRD (MNEST048363)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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