ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR774
source: miRNEST
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGATGAAGATTTGGATTGG miRNA* AATCGCGTTCTCCGTCTTCTT mismatches: 3 bulges: 2 |
pre-miRNA
GGAGGAAGCTCATCAGGAATCTAATCGCGTTCTCCGTCTTCTTTGAGGTGATTGCAGTGAGCTATGCGATTATGACGACTAGAGATGAAGATTTGGATTG
GAAGCTGAGGAGTTTCAGGA
dot-bracket secondary structure
....(((((((.((((...(((((((.((.(((.((((((..(((..(((((((((........)))))))))..)))...)))))).)))..)))))))
))..)))).)))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGAGGAAGCTCATCAGGAATCTAATCGCGTTCTCCGTCTTCTTTGAGGTGATTGCAGTGAGCTATGCGATTATGACGACTAGAGATGAAGATTTGGATTG
GAAGCTGAGGAGTTTCAGGA
dot-bracket secondary structure
....(((((((.((((...(((((((.((.(((.((((((..(((..(((((((((........)))))))))..)))...)))))).)))..)))))))
))..)))).)))))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9ZQ34|Y2433_ARATH: 0.00000000000008 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
