ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: miR393b
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCATGCGATCTCTTTGGAAG miRNA* TCCAAAGGGACCGCATTGATCC mismatches: 1 bulges: 1 |
pre-miRNA
ATGTTGCAGCAGGTGGAAGCTTCCAAAGGGACCGCATTGATCCAGTTTATTAATCGATTCGAGTTTGATTCATTCATCTATCATATCCATGGAAGCAGCT
GCAAATTTTTTTATCCAAGCTGATAATTTGGATCATGCGATCTCTTTGGAAGTTTCCGTCCGTGGCCCTC
dot-bracket secondary structure
........((.((((((((((((((((((((.(((((.(((((((.(((((.((.(((..((...(((.....)))....))..))).)).))..(((((
.................))))).))).)))))))))))).)))))))))))))))))).))...))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGTTGCAGCAGGTGGAAGCTTCCAAAGGGACCGCATTGATCCAGTTTATTAATCGATTCGAGTTTGATTCATTCATCTATCATATCCATGGAAGCAGCT
GCAAATTTTTTTATCCAAGCTGATAATTTGGATCATGCGATCTCTTTGGAAGTTTCCGTCCGTGGCCCTC
dot-bracket secondary structure
........((.((((((((((((((((((((.(((((.(((((((.(((((.((.(((..((...(((.....)))....))..))).)).))..(((((
.................))))).))).)))))))))))).)))))))))))))))))).))...))....
SIMILARITIES| miRBase sbi-MIR393: 0.0001 PMRD sbi-miR393: 0.0001 microPC miR393: 2e-56 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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