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ABOUT THIS RECORD
ID:
MNEST000341
species:
Cichorium intybus
miRNA family:
miR393b
source:
miRNEST
Taxonomy by NCBI:
Cichorium intybus
Cichorium
Cichoriinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATCATGCGATCTCTTTGGAAG
miRNA*
TCCAAAGGGACCGCATTGATCC
mismatches:
1
bulges:
1
View larger
pre-miRNA
ATGTTGCAGCAGGTGGAAGCT
TCCAAAGGGACCGCATTGATCC
AGTTTATTAATCGATTCGAGTTTGATTCATTCATCTATCATATCCATGGAAGCAGCT
GCAAATTTTTTTATCCAAGCTGATAATTTGG
ATCATGCGATCTCTTTGGAAG
TTTCCGTCCGTGGCCCTC
dot-bracket secondary structure
........((.((((((((((
((((((((((.(((((.(((((
((.(((((.((.(((..((...(((.....)))....))..))).)).))..(((((
.................))))).))).))))
)))))))).))))))))))))
)))))).))...))....
SIMILARITIES
miRBase
sbi-MIR393
:
0.0001
PMRD
sbi-miR393
:
0.0001
microPC
miR393
:
2e-56
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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