ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: miR164b
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATGTGCCCATCTTCCCCATC miRNA* TGGAGAAGCAGGGCACGTGTA mismatches: 3 bulges: 0 |
pre-miRNA
TTTGAACCCAACATGGTGTGTGGTGAGCAAGGTGGAGAAGCAGGGCACGTGTATTACTAACTCATCATTGCACCATCATGAAAATGTCTGGACGACATCA
TGAAGCCAACAAGGTACCTGGTGAGGTCACTGGTTCGAGGTTTCGGGACCTGGGTTCAGTGAGTAATCTCGAGCCAAAAGCTCATGGTTCTTGAAATGAG
TTAGTGTTCCATGTGCCCATCTTCCCCATCATGAACACACATACATTAATTTGCGGCAG
dot-bracket secondary structure
......(((((..((((((((((((..((.(((((.((((..(((((((((...(((((((((((((....((((((((((...((((.....)))))))
))).((((..........))))(((((((((((.((.(((((....))))).)).)))))))....))))((((.....)))).))))...)))..))))
))))))...)))))))))..)))).))))).))..))).)))))))))..))).))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTGAACCCAACATGGTGTGTGGTGAGCAAGGTGGAGAAGCAGGGCACGTGTATTACTAACTCATCATTGCACCATCATGAAAATGTCTGGACGACATCA
TGAAGCCAACAAGGTACCTGGTGAGGTCACTGGTTCGAGGTTTCGGGACCTGGGTTCAGTGAGTAATCTCGAGCCAAAAGCTCATGGTTCTTGAAATGAG
TTAGTGTTCCATGTGCCCATCTTCCCCATCATGAACACACATACATTAATTTGCGGCAG
dot-bracket secondary structure
......(((((..((((((((((((..((.(((((.((((..(((((((((...(((((((((((((....((((((((((...((((.....)))))))
))).((((..........))))(((((((((((.((.(((((....))))).)).)))))))....))))((((.....)))).))))...)))..))))
))))))...)))))))))..)))).))))).))..))).)))))))))..))).))...
SIMILARITIES| miRBase ptc-MIR164e: 0.0000000000009 PMRD ptc-miRf11320-akr: 0.0000000000009 microPC miR164: 8e-109 | UniProt no hits RFAM MIR164: 0.00000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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