miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST000353
species:
Cichorium intybus
miRNA family:
MIR164
source:
miRNEST
Taxonomy by NCBI:
Cichorium intybus
Cichorium
Cichoriinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGTACGTGCT
miRNA*
CATATACCCTTACTCTCCATC
mismatches:
4
bulges:
0
View larger
pre-miRNA
AACGACTTCTTTTTGAAGATATGGTTCATGC
TGGAGAAGCAGGGTACGTGCT
AAATCCATGATGTGATTTAG
CATATACCCTTACTCTCCATC
TTGAATC
GGTTTCTTTAATTCTTCACAA
dot-bracket secondary structure
............(((((((..(((((((...
((((((...((((((.(((((
(((((((...)).)))))))
))).))))))...))))))..
.))))))
)...)))))))..........
SIMILARITIES
miRBase
ptc-MIR164f
:
0.000006
PMRD
ptc-miR164f
:
0.000006
microPC
miR164
:
0.00009
UniProt
no hits
RFAM
MIR164: 0.0001
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record