ABOUT THIS RECORDspecies: Citrus reticulata
miRNA family: miR482a
source: miRNEST
Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTGGGAGCGTGGGGTAAGAA miRNA* CTTCCCTATGCCTCCCATTCC mismatches: 0 bulges: 2 |
pre-miRNA
CAGAGGAGGAGGAGAGGAAGATTGAAGCGAGGAAGTTTTGGGAGTGGGAGCGTGGGGTAAGAAGTGAAGAAAACGTATAATTTTTCTTTTCTTTTTCAAT
TGAGAAAGAAAATTACAAATTCAATTTCTTCCCTATGCCTCCCATTCCTATGATTTCCTGCAGTTCCTTCCTCTCTTTATCATCTCT
dot-bracket secondary structure
.(((.((.((((((((((((...(((((.((((((((.(((((((((((((((((((.(((((((...(((...(((.........(((((((((((...
.))))))))))).)))...))).)))))))))))))).)))))))))))).))))))))))..))))))))))))))).)).)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGAGGAGGAGGAGAGGAAGATTGAAGCGAGGAAGTTTTGGGAGTGGGAGCGTGGGGTAAGAAGTGAAGAAAACGTATAATTTTTCTTTTCTTTTTCAAT
TGAGAAAGAAAATTACAAATTCAATTTCTTCCCTATGCCTCCCATTCCTATGATTTCCTGCAGTTCCTTCCTCTCTTTATCATCTCT
dot-bracket secondary structure
.(((.((.((((((((((((...(((((.((((((((.(((((((((((((((((((.(((((((...(((...(((.........(((((((((((...
.))))))))))).)))...))).)))))))))))))).)))))))))))).))))))))))..))))))))))))))).)).)))..
SIMILARITIES| miRBase csi-MIR482a: 1e-35 PMRD gma-miR482: 0.000009 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
