ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR390
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATCCTGAGTTTCA mismatches: 1 bulges: 0 |
pre-miRNA
AAAAGTAAAGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGGTGCCATGAATATGGGAATGATCTAGGGTTTCATGATAAATAATGGGCACTGGC
GCTATCCATCCTGAGTTTCATGGCTTCTTCTTACTCTC
dot-bracket secondary structure
...(((((.((((((.((((.((((((((((.((((((((((...((((((.....(((((((...........)))))))..........)))))))))
))))))).)))))))))).)))).)))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAAGTAAAGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGGTGCCATGAATATGGGAATGATCTAGGGTTTCATGATAAATAATGGGCACTGGC
GCTATCCATCCTGAGTTTCATGGCTTCTTCTTACTCTC
dot-bracket secondary structure
...(((((.((((((.((((.((((((((((.((((((((((...((((((.....(((((((...........)))))))..........)))))))))
))))))).)))))))))).)))).)))))))))))...
SIMILARITIES| miRBase csi-MIR390: 6e-74 PMRD ghr-miR390b: 0.00000000000003 microPC miR390: 1e-50 | UniProt no hits RFAM MIR390: 0.0000000000001 | most similar mature miRNAs |
Identical with: miR390 from microPC (MNEST046796) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
