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ABOUT THIS RECORD

ID: MNEST000391
species: Oryza sativa
miRNA family: MIR2123
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAAAAGTCAACGGCGTCATA

miRNA*
TGACGCCATTGACTTTTTAAC

mismatches: 1
bulges: 0

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pre-miRNA
CTCCCCTCCGTATTTTAATGTATGACGCCATTGACTTTTTAACAANCGTTTGNCCTTTTGTCTTATTAACAAAATTATGTAATTATCATTTATTTTATTG
TNACTTGATTTATCATCAAATGTTCTTTAAGCATGACATAAGTATTTTTGCATTTGCATAAAAAAATTGAATAAGATGAATGATCAAACGTTGGTTAAAA
AGTCAACGGCGTCATA
CATTAAAATACGGAGGGAG


dot-bracket secondary structure
...((((((((((((((((((((((((((.((((((((((((((..((((((....(((((((((((.......((((((((........(((((..(((
(..(((((.....(((...)))....))))).))))...))))).........))))))))........)))))))))))....)))))).).)))))))
)))))).)))))))))
)))))))))))))))))..



SIMILARITIES
miRBase osa-MIR1884a: 0.00000000001

PMRD osa-miR1884a: 0.00000000001

microPC miR1884: 2e-32
UniProt sp|P0C282|SAP18_ORYSJ: 0.000004

RFAM MIR806: 2e-97
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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