ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIRf968
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGTTAAGCTCAGGAGGGATA miRNA* TCCATCCTGAGTTTCATGGCT mismatches: 2 bulges: 0 |
pre-miRNA
TGTCTAAAAGTAAAGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGGTGCCATGAATATGGGAATGATCTAGGGTTTCATGATAAATAATGGGCA
CTGGCGCTATCCATCCTGAGTTTCATGGCTTCTTCTTACTCTCTCTCT
dot-bracket secondary structure
........(((((.((((((.((((.((((((((((.((((((((((...((((((.....(((((((...........)))))))..........))))
)))))))))))).)))))))))).)))).)))))))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTCTAAAAGTAAAGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGGTGCCATGAATATGGGAATGATCTAGGGTTTCATGATAAATAATGGGCA
CTGGCGCTATCCATCCTGAGTTTCATGGCTTCTTCTTACTCTCTCTCT
dot-bracket secondary structure
........(((((.((((((.((((.((((((((((.((((((((((...((((((.....(((((((...........)))))))..........))))
)))))))))))).)))))))))).)))).)))))))))))........
SIMILARITIES| miRBase csi-MIR390: 7e-77 PMRD ghr-miR390b: 0.00000000000003 microPC miR390: 1e-50 | UniProt no hits RFAM MIR390: 0.0000000000001 | most similar mature miRNAs |
Identical with: miR390 from microPC (MNEST046796) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
