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ABOUT THIS RECORD
ID:
MNEST000449
species:
Citrus unshiu
miRNA family:
MIR156
source:
miRNEST
Taxonomy by NCBI:
Citrus unshiu
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCACA
miRNA*
TGTTTTTTTTTTTTTTTTTTA
mismatches:
3
bulges:
0
View larger
pre-miRNA
ACGGCATGACAG
TGTTTTTTTTTTTTTTTTTTA
ACAACAAACCAACATTCTAGTCTTGAGAATAAGTTCATTGCAGCAGGATTTTCAAGAAGAGAATCCA
GAATTATTATATGGAAAGATAACAACCTCTTAGTGACTTACTACTCCCAATGAAAGGGAATTGTTTGAGGGGTATCACTGGCTGCGGACCCATCATATCC
CAAATGAAACACTCCAGGGCAATGAACATTATCATCCTGATCACTGGATACCAGAACAGATTCCATGGGCTCTACACTGTGATTATGCAGGCTTGTGCCC
AAGGACCGCACCAGTGGCATTGAACTAGGCGGCATCATTTGGCTCAAACTGATACCAGATGTCTGTGTTGTTGGTGA
TGACAGAAGAGAGAGAGCACA
AT
CTGAGTC
dot-bracket secondary structure
..(((..((..(
(((((((((((((((.((...
.......(((((((((((.......))))..((((((.(((....((((((((.....)))))))).
...(((((.........)))))..((((((((..(((.......((((.......))))...)))))))))))..((((((.(((((.....((((....
...)))).......(((((...(((......))))))))(((.((((...))))....)))(((.(((((......((((......))))......))))
).))))))))))))))))).))))))..((((...(((((((.(((...)))..))))))).))))..)))))))..
.)).)))))))))))))))).
.)
)...)))
SIMILARITIES
miRBase
sbi-MIR156d
:
0.0000003
PMRD
csi-miR156b
:
0
microPC
miR157
:
0.00009
UniProt
no hits
RFAM
mir-156: 0.0004
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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