miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST000450
species: Citrus unshiu
miRNA family: MIR530
source: miRNEST

Taxonomy by NCBI:
Citrus unshiu Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCATTTGCACCTGCACCTTG

miRNA*
 AGGTGCAGCTGTATATGCAGG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GGCACGAGATTTTTCTGCATTTGCACCTGCACCTTGCTGTGCTGTTATCTGGGTTGACGAAGATCATCATGATGATCAGCTTCAAAACTCGAAAGCATGA
AGGTGCAGCTGTATATGCAGGTGAATGCCATTT

dot-bracket secondary structure
((((.....(((.(((((((.((((.(((((((((..((((((......((((((...((((...((((...))))...))))..))))))..)))))))
)))))))).)))).))))))).)))))))....


SIMILARITIES
miRBase csi-MIR530a: 4e-69

PMRD ptc-miRf11026-akr: 0.00003

microPC miR1030: 0.00003		UniProt no hits

RFAM MIR530: 0.0001		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;