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ABOUT THIS RECORD
ID:
MNEST000453
species:
Citrus unshiu
miRNA family:
MIR398
source:
miRNEST
Taxonomy by NCBI:
Citrus unshiu
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCACCCCT
miRNA*
GAGTGAACCTGAGAACAGAGG
mismatches:
2
bulges:
1
View larger
pre-miRNA
TGCAACAGATGTGAACCCCAGAG
GAGTGAACCTGAGAACAGAGG
GTGGCGTTGGCTTAAATTTGATTTGCATTGCTGCTGCCTGCTCCTGCCATACATTA
AATCAAAAAGATTGTATGTGGCCAACGCACCT
TGTGTTCTCAGGTCACCCCT
TTGGGAATTCAATTGTCAAT
dot-bracket secondary structure
....((((...((((.(((((((
(.((((.((((((((((.(((
(((.(((((((((((((...))))).((.((.((.....))....)).))((((..
((((.....))))..)))))))))))))))))
).)))))))))))))).)))
)))))..)))).))))....
SIMILARITIES
miRBase
csi-MIR398
:
6e-87
PMRD
vvi-miR398a
:
0.0000001
microPC
miR398
:
5e-69
UniProt
no hits
RFAM
MIR398: 0.00000001
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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