ABOUT THIS RECORDspecies: Citrus unshiu
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Citrus unshiu Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GAGTGAACCTGAGAACAGAGG mismatches: 2 bulges: 1 |
pre-miRNA
TGCAACAGATGTGAACCCCAGAGGAGTGAACCTGAGAACAGAGGGTGGCGTTGGCTTAAATTTGATTTGCATTGCTGCTGCCTGCTCCTGCCATACATTA
AATCAAAAAGATTGTATGTGGCCAACGCACCTTGTGTTCTCAGGTCACCCCTTTGGGAATTCAATTGTCAAT
dot-bracket secondary structure
....((((...((((.((((((((.((((.((((((((((.((((((.(((((((((((((...))))).((.((.((.....))....)).))((((..
((((.....))))..)))))))))))))))))).)))))))))))))).))))))))..)))).))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCAACAGATGTGAACCCCAGAGGAGTGAACCTGAGAACAGAGGGTGGCGTTGGCTTAAATTTGATTTGCATTGCTGCTGCCTGCTCCTGCCATACATTA
AATCAAAAAGATTGTATGTGGCCAACGCACCTTGTGTTCTCAGGTCACCCCTTTGGGAATTCAATTGTCAAT
dot-bracket secondary structure
....((((...((((.((((((((.((((.((((((((((.((((((.(((((((((((((...))))).((.((.((.....))....)).))((((..
((((.....))))..)))))))))))))))))).)))))))))))))).))))))))..)))).))))....
SIMILARITIES| miRBase csi-MIR398: 6e-87 PMRD vvi-miR398a: 0.0000001 microPC miR398: 5e-69 | UniProt no hits RFAM MIR398: 0.00000001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
