ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: MIRf146
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCATCTTCTTCGTCTTCCTT miRNA* GGAGGAAGAGGAAGAGAAATA mismatches: 5 bulges: 0 |
pre-miRNA
AACGGTTTCCCTCCATCTTCTTCGTCTTCCTTGTCTATGAAAACTACAATTCCTTGACTTGTTAGAGCTTCGTGGAGATCGGATATGAAACTACGTCCAG
TGTCGTTATTAGCTCTGTGGTCCTTAGCTCTGTGGCTGAGGAAAACGTCGTATCTTCGTAAAGGAGGAAGAGGAAGAGAAATAGAATAAGG
dot-bracket secondary structure
....(((((......((((((((.((((((((...((((((.((.((..(((((((.((...(((((((....(((...((((..((((((.(((.....
))).))).)))..))))...)))..))))))).)).)))))))...)).))...)))))))))))))).))))))))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AACGGTTTCCCTCCATCTTCTTCGTCTTCCTTGTCTATGAAAACTACAATTCCTTGACTTGTTAGAGCTTCGTGGAGATCGGATATGAAACTACGTCCAG
TGTCGTTATTAGCTCTGTGGTCCTTAGCTCTGTGGCTGAGGAAAACGTCGTATCTTCGTAAAGGAGGAAGAGGAAGAGAAATAGAATAAGG
dot-bracket secondary structure
....(((((......((((((((.((((((((...((((((.((.((..(((((((.((...(((((((....(((...((((..((((((.(((.....
))).))).)))..))))...)))..))))))).)).)))))))...)).))...)))))))))))))).))))))))))))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
