ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGCTCGAGG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 4 bulges: 0 |
pre-miRNA
TTTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACTTTTATTCGATCTTTTGATTTTTGTGTTTATATTTAGTGTCGTCGGACCAGGCTTCATTCCCC
CCAATTAAT
dot-bracket secondary structure
.(((..(((.((((((((..((((((.((((.((((((..(((.((...............))...)))...)))))).)))).))))))..))))))))
.))).))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACTTTTATTCGATCTTTTGATTTTTGTGTTTATATTTAGTGTCGTCGGACCAGGCTTCATTCCCC
CCAATTAAT
dot-bracket secondary structure
.(((..(((.((((((((..((((((.((((.((((((..(((.((...............))...)))...)))))).)))).))))))..))))))))
.))).))).
SIMILARITIES| miRBase csi-MIR166e: 0.000000000000006 PMRD cpt-miR166: 0.00000000000002 microPC miR166: 9e-45 | UniProt no hits RFAM mir-166: 0.000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
