miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST000491
species: Cucumis melo subsp. melo
miRNA family: MIR319
source: miRNEST

Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGACTGAAGGGAGCTCC

miRNA*
 AGCTTTCTTCAGTCCACTC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TAAGAGAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGGTTTAATTAGCTGCCGACTCATTCATTCAAATATTGAGTCCAAAAATTTCAAATCTCAAA
TGGATTCACTAAACGATTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTCCCTTTTCTTT

dot-bracket secondary structure
.(((.(((((((((((((((((...(((((.(((..((((((((((((..((.(((..(((((((.((...((.((((((((..................
)))))))).))...)).)))))))..))).))...)))))))))))).))).)))))...))))))))))))))))).)))......


SIMILARITIES
miRBase ptc-MIR319a: 1e-35

PMRD ptc-miR319a: 1e-35

microPC miR319: 5e-97		UniProt no hits

RFAM MIR159: 1e-33		most similar mature miRNAs

Identical with: miR319 from microPC (MNEST045333)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;