ABOUT THIS RECORDspecies: Curcuma longa
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Curcuma longa Curcuma Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGAGGGATCCCTTCCTTG miRNA* AGGGGGGACTCCTTTTGAAT mismatches: 3 bulges: 1 |
pre-miRNA
ACGAAGGCGGAGCACCAGGTGAAGGGGGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCAAAAATCAACCTT
TGCTGGTCCGGAGGGATCCCTTCCTTGGCCTGGATCTTGGCTTTTA
dot-bracket secondary structure
..((((((.(((..((((((.(((((((((.((((((.((......((((..(((.(((.(((((((....)).)))))..)))))).(((.......))
))))).)).)))))).)))).))))).))))))..))).)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACGAAGGCGGAGCACCAGGTGAAGGGGGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCAAAAATCAACCTT
TGCTGGTCCGGAGGGATCCCTTCCTTGGCCTGGATCTTGGCTTTTA
dot-bracket secondary structure
..((((((.(((..((((((.(((((((((.((((((.((......((((..(((.(((.(((((((....)).)))))..)))))).(((.......))
))))).)).)))))).)))).))))).))))))..))).)))))).
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 0.0000000000001 microPC no hits | UniProt sp|P0CH32|UBQ4_ARATH: 8e-19 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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